Shelf Sea Biogeochemistry blog

Showing posts with label Shelf Sea Biogeochemistry. Show all posts
Showing posts with label Shelf Sea Biogeochemistry. Show all posts

Tuesday 17 March 2015

Studying radium concentrations in the muddy sendiments off the north west coast of Cornwall.

On Tuesday we continued with our coring as well as performing a few more CTDs.  Amber Annett (Edinburgh University) is taking water column samples from the CTD and sediment samples from an instrument called a megacorer, in order to study radium concentrations in the sediment and the overlying water, and she has written the following blog piece about her work.

Naturally occurring radium is a very useful element for studying many different shelf sea processes. This is because it is radioactive (no, not that dangerous sort of radioactive!), and we know the rate at which radium naturally decays. This means that radium can act as a kind of internal clock for a parcel of water, telling us how fast things happen.

Luckily, radium is also extremely rare in seawater, so even though it is a radioactive element it is present at concentrations thousands of times lower than anything we would need to worry about. Even though I use extremely sensitive detectors to measure radium (photo), because it is so rare I still need to sample a very large amount of water  to collect enough for a useful measurement– up to 150 litres for just one sample.


Amber's radium detectors on board the RRS Discovery

Radium comes from rocks, and there is plenty of lithogenic (rock) material in the sandy, muddy sediments on the UK continental shelf here off the north west coast of Cornwall. I am using a megacorer to collect pore water (water from in between the sand and mud particles inside marine sediments) and samples from the sediment-water interface, as well as a CTD to measure radium in the water column above. This lets me look at how much radium diffuses out of the sediments and into the sea, as well as how quickly this process occurs. This work is part of the trace metal group (SSB Work package 3), who are ultimately looking at how shelf seas can act as a source of iron, an essential nutrient for marine plant life, that is very scarce in many areas of the ocean. 
We will be using radium concentrations to help track iron that comes from sediments, where it goes and how fast it gets there.

Thursday 12 March 2015

Oxygen concentration in the sediments and the effects of filter coffee in human behaviour

Louis Byrne, British Oceanographic Data Centre, NOC

Thursday was a quieter day on board the RRS Discovery and we managed to have some time to relax (and catch up on some much needed sleep). In the morning we all learnt a valuable lesson about what happens when you give a certain SAMS research scientist a filtered coffee before noon - it seems to be roughly equivalent to feeding a gremlin after midnight. Luckily Natalie had calmed down enough by the evening to give Steve, the CPO(s) [Chief Petty Officer (science)] a haircut, with the finishing touches being applied by Eva McQuillan, the Irish Observer on this cruise.

Earlier in the blog in the post titled ‘What is happening in the benthos?” we looked at the work of Natalie and SAMS (Scottish Association of Marine Science) in examining carbon cycling and storage in different types of marine sediment. In addition to the measurements outlined in that post, Natalie is also taking separate core samples and measuring them for oxygen consumption and depth in the sediment.

 

Fig. 1: Sediment core being profiled for oxygen
One type of measurement involves using a very fine oxygen probe (microelectrode) to find out how deeply oxygen penetrates into the sediment. This probe is lowered into a sediment core like the one pictured, and as it goes down the core it measures how the oxygen concentration changes as you descend deeper into the sediment.  As you go down deeper into the sediment the oxygen concentration decreases quickly, as the oxygen is being used by bacteria and other organisms living in the sediment quicker than it is being mixed back into the sediment. 
 
This decline is not the same for all types of sediment, as the more sandy a sediment is, the deeper oxygen can penetrate into the sediment. This is for a couple of reasons. The first is that muddy sediments have smaller grains which can fit together more tightly meaning the sediment can hold less water between the grains and the oxygen in that water gets used up quicker.

The second is because muddy sediments can hold more organic matter giving the aerobic bacteria (bacteria that respire using oxygen) in the sediment more organic matter to consume. In consuming the extra food they will use more oxygen in the sediment. The picture below (Fig. 2), shows oxygen profiles from one of the sediment cores collected during this cruise (the sediment type is sandy mud which is mud with a little bit of sand).  By just one centimetre (1000 micro metres =1 mm) below the surface of the sediment, all of the oxygen has been used up. If this was an oxygen profile from sandy sediment, the oxygen would penetrate to depths of five centimetres or more.

 

Fig. 2:
Oxygen profile from that sediment core
This particular sediment core also beautifully illustrates how some marine animals have adapted strategies to cope with the low oxygen concentrations. The burrow which you can see in Fig. 3 is that of a polychaete worm, and it creates a flow of oxygen from the surface of the sediment down to a depth of several centimetres by moving its body (this is known as bioirrigation). The process of moving sediment (e.g. to create burrows) is known as ‘bioturbation’. This flow of oxygen from the water above the sediment allows the worm to live in the oxygen poor mud and also allows oxygen to penetrate deeper into the mud than it would normally be able to do. This can then affect the chemistry within the sediments and the overlying water, and alter the oxygen penetration depth.

 

Fig. 3: Polychaete worm in its burrow.

Thursday 5 March 2015

Deploying the large yellow torpedo!

Louis Byrne, British Oceanographic Data Centre, NOC

Thursday was an exciting day for this cruise as we were finally able to deploy Autosub3, an autonomous underwater vehicle (AUV) which looks like a large yellow torpedo. Autosub3 was developed at the National Oceanography Centre in Southampton, and can be pre-programmed to survey a site for over 24 hours at a time. For this cruise the main objective of Autosub3 was to collect images of the seabed at the 4 sampling stations to look for what animals are living on the different sediment types.

This is done by pre-programming the vehicle to complete a mission in a ‘lawn mower’ style pattern where images are taken along 5km tracks at more than one per second!! Meaning thousands of images are collected in one mission. We are also able to collect information on the seabed morphology using two different scientific methods (bathymetry and sidescan) allowing the creation of biological map. This is a new method being used for monitoring of Marine protected areas and thus is at the cutting edge of science.



 Mini-STABLE deployment (photo by Richard Cooke)

Autosub was the first instrument deployed at Site G, which is approximately 26 miles west of site A. Once in the water we returned to Site A to deploy a Lander called ‘Mini-STABLE’.  Landers are pieces are frames which sit on the seabed at a given location and dependent on the needs of the study have different instruments attached. The instruments attached to this particular instrument are being used to measure sediment transport. Autosub and Mini-STABLE are two high tech pieces of equipment, and illustrate how the ocean can be investigated in different ways dependent on what you are trying to find out.



Recovery of Autosub3 (photo by Richard Cooke)

After deploying Mini-STABLE we travelled back to Site G to pick up Autosub3 after its mission.

The day of dolphins and trace elements

Louis Byrne, British Oceanographic Data Centre, NOC

Wednesday was our last day at Station A before heading to station G.  Half way through our third CTD of the day we were ambushed by a pod of common dolphins. The dolphins stayed around the boat for most of the morning and into the afternoon, with one theory being that they like the way the waves break around the ship. Aside from all that cetacean excitement some science also got squeezed in to the day’s events.



Common Dolphins around Site A in the Celtic Sea

Today was a day of trace elements, complete with their ultra-clean CTD, ultra-clean labs and ultra-tired scientists! For some background to the marine study of Iron, including why we are looking for it and why it is so hard to measure, there is an excellent summary written for this blog by Jonathan Sharples during one of the previous cruises – see post titled ‘Sampling Iron’ written on 15th November! 



Trace metal scientists at work in their ultra-clean lab.

As mentioned in Jonathan’s blog post we believe that one major source of Iron is resuspension from sediments on the continental shelf. The edge of the continental shelf can be thought of as similar to a vast desert on the edge of a gigantic cliff face, with the water depth increasing from just a few hundred metres to distances measured in kilometres as you move from the shelf edge towards the open ocean.
   



The broad, gentle pitch of the continental shelf gives way to the relatively steep continental slope.

continental shelf. 2015. Encyclopædia Britannica Online. Retrieved 13 April, 2015, from https://www.britannica.com/EBchecked/topic/134970/continental-shelf/285032/Origin

Currents and waves cause particles of sand and mud on the sea floor to be lifted off the seabed and mixed into the water column above, and these can then be transported off the shelf edge in giant plumes of resuspended particles. The last cruise found evidence of currents along the sea floor of the continental slope which were pulling sediment off the seabed and causing it to mix in the water column above.  


On this cruise one thing we are measuring is the concentration of Iron in the shelf sediments, which can be compared to Iron concentrations in sea water above to work out how much Iron the sediment is supplying the water column each year. As phytoplankton growth (and thus, primary productivity) is limited by Iron in 25% of the open ocean, a better understanding of the processes which supply Iron to ocean waters is important to understand how primary productivity in the open may change in response to climate change.



Charlie Thompson, Natalie Hicks and a
man in a hard hat pointing at the location of Site A.