Shelf Sea Biogeochemistry blog

Showing posts with label Shelf Seas Biogeochemistry programme. Show all posts
Showing posts with label Shelf Seas Biogeochemistry programme. Show all posts

Monday 2 March 2015

Discovery leaving Southampton for cruise DY021

By Louis Byrne, British Oceanographic Data Centre, NOC


RRS Discovery docked in Southampton. Picture taken by Amber Annett

After a week of setting up where all manner of frames, sensors, analysers, buoys, containers, chemicals, supermassive autonomous vehicles and an array of bedraggled looking scientists have boarded the RRS Discovery it was finally time to leave the port of Southampton for the open sea!

Breakfast on the morning of departure is at 7:30 and is followed by a safety briefing and familiarisation before departure at 1015. Rumour had it that we were leaving port into fairly rough seas, and once we have escaped the shelter of Southampton docks those rumours turn out to be correct.  It is a bit of a baptism of fire for some of the scientists on board and I think many are feeling a little queasy. 

Before our stomachs have had time to settle it is time to practice the muster, which is similar to a fire drill, however once at the assembly point everyone is required to put on a life jacket, enter an orange life boat and consider how rubbish it would be if we actually had to use it,  52 people in a small orange box with no toilet, one small hatch for air and fishing rods which aren’t actually provided for us to catch fish, but to give us the psychological illusion that there actually something we can actually do ourselves to improve our chances of survival as we get tossed around like an orange cork in a gigantic tumble dryer (if today’s  seas are anything to go by). 


Mini Stable (left) and autosub (right) on deck departing Southampton. Picture taken by Richard Cooke, National Oceanography Centre, Liverpool.
The original plan was to conduct some equipment trials at a long term observation station near Plymouth called E1, however due to the state of the seas we’ll be skipping the trials station and heading straight out to the Celtic Sea and to site A, which we are expected to reach at 9PM tomorrow (Monday). As there is little left to do today a few of us hit the bar and tv room, just in time to watch England get mauled by Ireland in the 6 nations. All in all it’s been a pretty rough day.  Just before signing off there is time for a bonus question:

Who set off the Discovery’s fire alarm the night before departure by spraying deodorant in their cabin? Answer in the next blog.

Shelf Seas Biogeochemistry – A short introduction

By Louis Byrne, British Oceanographic Data Centre, NOC

We woke up on Monday to a sea which was perhaps even worse than Sunday. We were still a fair distance away from site A and were not scheduled to reach site A till approximately 2100 Monday evening. Due to the rough seas I spent the majority of the day hugging my toilet bowl, but not before making the rookie mistake of blocking my sink with the remains of my breakfast, which Geoff the Steward was not too happy about.  Due to a day spent in transit not much happened, and due to my sea-sickness I was not around to see what did, therefore I thought it would be a good time to introduce the reason why we’re rushing towards the Celtic Sea at a slow and steady speed of seven knots.

Although shelf seas make up only 5% of the ocean surface, they have been estimated to be the most valuable biome on earth, with high levels of primary productivity supporting diverse ecosystems. High concentrations of nutrients support the growth of phytoplankton, which are single celled marine organisms that photosynthesise like plants on land. Like plants on land, Phytoplankton are the base of the marine food web and they provide a diverse food source for many marine creatures, such as zooplankton.
 



Phytoplankton are the foundation of the oceanic food chain.

Zooplankton are tiny marine animals which are food for fish and countless other marine organisms, that are then in turn eaten by others. It is in this way that the sun’s energy fixed by phytoplankton on the surface of the water column is distributed throughout the marine ecosystem, underpinning more than 90% of global fisheries and offering many other important ecosystem services.

In addition to supporting the entire marine food web, the photosynthesis carried out by phytoplankton also removes significant amounts of carbon dioxide from our atmosphere.  Although tiny, phytoplankton have a disproportionately massive effect on our atmosphere, and are responsible for creating as much as half of the oxygen that we breathe, removing an equally large amount of carbon dioxide as they do it. Some of the carbon extracted by the phytoplankton will sink to the sea floor and be stored in the sediments (often for thousands of years!), reducing the overall concentration of carbon dioxide in our atmosphere.

In order for the shelf seas to sustain these high levels of production, the phytoplankton must be supplied with nutrients, but where do these nutrients come from? It is the need for us to better understand the role of shelf seas in the global nutrient cycle, how this supply of nutrients determines the shelf’s primary and secondary production and how this affects other processes such as carbon storage which has led to the Shelf Seas Biogeochemistry programme.

At 2100 on Monday night we reached site A and decided that the seas were too rough to sample that night. Therefore, an 0600 hours CTD cast was scheduled for the following morning, and we were hopeful that our cruise was about to get its first piece of data.

For those of you wishing to see the answer to yesterday’s question, the answer is Richard Cooke of the National Oceanography Centre, Liverpool.

Wednesday 2 April 2014

New modelling tool to enhance global understanding


Plymouth Marine Laboratory

Open access model allows scientists to predict climate and other anthropogenically influenced environmental changes.
Today sees the release of the open-source Shelf Seas Biogeochemistry programme-ERSEM model, as a modelling tool for the marine science community.

ERSEM (the European Regional Seas Ecosystem Model) is a numerical representation of an ecological system, studied to gain understanding of the real-life system. It is designed to simulate carbon and nutrient cycling and ecosystem response in European shelf seas and beyond. This enables scientists to make predictions about future conditions and changes within the Earth system under anthropogenic influences andclimate change.

PML was not only part of the original consortium which developed ERSEM, but has since led the development of the original model, finding applications in a number of fields. Working in collaboration with the Centre for Environment, Fisheries and Aquaculture Science (Cefas), the National Oceanography Centre (NOC) and the UK Met Office, this version brings together aspects of ERSEM developments made at PML, Cefas and the Royal Netherlands Institute for Sea Research (NIOZ).

By making the model open access and freely available to all (including full documentation), the scientists involved hope to foster collaborations within the scientific community, as well as improve transparency and sharing on a global scale. It will also allow PML scientists to monitor ERSEM’s user base, providing adequate and rapid support, whilst enabling them to assess and increase its impact in order to further enhance and refine the model.

The open access model is being made available through the Shelf Seas Biogeochemistry programme, which is funded by the Natural Environment Research Council and theDepartment for Environment, Food & Rural Affairs (Defra). The aim of the programme is to reduce the uncertainty in our understanding of nutrient and carbon cycling within the shelf seas, and of their overall
role in global biogeochemical cycles.

Further Information

SSB-ERSEM Code download